It is quite easy to do instead of MigrateExecutable class, we need to use MigrateBatchExecutable and instead of import we need to use batchImport
use Drupal\migrate_tools\MigrateExecutable;
$migration = \Drupal::service('plugin.manager.migration')->createInstance($migration_id);
if (!empty($migration)) {
// here we can set additional options like limit, update or force the import.
$options = [
'limit' => 0,
'update' => 1,
'force' => 1,
];
$executable = new MigrateBatchExecutable($migration, new MigrateMessage(), $options);
$executable->batchImport();
}